PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC039562.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MIKC_MADS

Protein Properties

Length: 207aa MW: 23826.2 Da PI: 9.4008

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC039562.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88	5.2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien+ nrq+t+skRrngi+KKA+E+SvLC+a vav+if+s+gk++ey+s EcC039562.20 10 RIENTNNRQITYSKRRNGIIKKAKEISVLCGAHVAVVIFGSSGKMHEYCS 59 8***********************************************96 PP
2	K-box	87.2	3.2e-29	71	159	1	89
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 y++++gk+l++ak+e+l++e++++kk ++nLq ++Rhl+Ged++sL++keL+ Le+ Le++l +R++K+e +++q ++l++ke+ ++e EcC039562.20 71 YHTQRGKRLWDAKHENLSNEIDRIKKANDNLQMQLRHLKGEDVTSLNYKELMVLEDVLENGLACVRDQKDEAVTTQRRNLKQKEEVTKE 159 78899999****************************************************************************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.6E-39	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.922	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.55E-34	2	96	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.05E-38	2	80	No hit	No description
PRINTS	PR00404	1.5E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.5E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	5.1E-18	82	157	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.749	84	172	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MGRGKIEIRR IENTNNRQIT YSKRRNGIIK KAKEISVLCG AHVAVVIFGS SGKMHEYCSP 60 KASLVDILDQ YHTQRGKRLW DAKHENLSNE IDRIKKANDN LQMQLRHLKG EDVTSLNYKE 120 LMVLEDVLEN GLACVRDQKD EAVTTQRRNL KQKEEVTKEL YLYGQHTEMM MAENGRGGDN 180 TCRQRVDSHV PFAFCGQPVQ PKSQERI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-15	1	59	1	59	MEF2 CHIMERA
6byy_B	1e-15	1	59	1	59	MEF2 CHIMERA
6byy_C	1e-15	1	59	1	59	MEF2 CHIMERA
6byy_D	1e-15	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001289656.1	1e-105	floral homeotic protein GLOBOSA-like
Swissprot	Q0HA25	4e-87	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	G9I2R9	1e-107	G9I2R9_9MYRT; PI
STRING	XP_010055970.1	1e-105	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	3e-78	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]