PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC040443.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 110aa    MW: 11237.5 Da    PI: 9.208
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC040443.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.81e-09226327
                  S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                   ++C +fa  G CkyG  Ck++H++
  EcC040443.20  2 VPNCTYFAIHGVCKYGRACKYNHPM 26
                  689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.648127IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5428IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
GVPNCTYFAI HGVCKYGRAC KYNHPMGMLS YSPSASSLAD MPVAPYPVGS SIGTLAPSSS  60
SSELRPDLIS GSLREASSTR SSSSTSASSA SIGSVLSKSE NASHSKSQKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010037077.18e-66PREDICTED: zinc finger CCCH domain-containing protein 34 isoform X1
SwissprotQ5NAW21e-26C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A059D2232e-64A0A059D223_EUCGR; Uncharacterized protein
STRINGXP_010037077.13e-65(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.23e-18C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]