PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041054.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 304aa    MW: 33737.4 Da    PI: 4.9312
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041054.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.92.9e-1965115256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  EcC041054.10  65 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 115
                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.08E-3364124No hitNo description
PROSITE profilePS5103222.93265122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-3265123IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-2365123IPR016177DNA-binding domain
SMARTSM003802.7E-4065128IPR001471AP2/ERF domain
PfamPF008471.4E-1266115IPR001471AP2/ERF domain
PRINTSPR003674.9E-116677IPR001471AP2/ERF domain
PRINTSPR003674.9E-1188104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009845Biological Processseed germination
GO:0055085Biological Processtransmembrane transport
GO:0080188Biological ProcessRNA-directed DNA methylation
GO:2000630Biological Processpositive regulation of miRNA metabolic process
GO:2000636Biological Processpositive regulation of primary miRNA processing
GO:0005681Cellular Componentspliceosomal complex
GO:0015030Cellular ComponentCajal body
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0022891Molecular Functionsubstrate-specific transmembrane transporter activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
LSLNQPLYNF AGELSPLQHP QQRLLQYWSD ALNLSPRGRM MMMNRLGPDG RPIFRPPQPI  60
NTTKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED AALAYDREAF KLRGENARLN  120
FPELFLNKDK AAESAGPSSS SSSPPKDENV ITRQYMKTSP QASEDPTQQD SSMELMTSPP  180
QETNPDGDSG IGSSEATASE AVQGVAGSSI AGEGGSVSQE MVWREMAEAW CNAMPAGWGP  240
GSPVWDDLDA SSNILLPSHL PFGHGNEQEF NENNVRRQQE NFCAASSSSS SSCPMKPFFW  300
KDQD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2164122463ATERF1
3gcc_A8e-2164122463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035718.10.0PREDICTED: ethylene-responsive transcription factor ERF054
SwissprotQ9SKT15e-57ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLA0A059A0E90.0A0A059A0E9_EUCGR; Uncharacterized protein
STRINGXP_010035718.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.17e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]