PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041431.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 501aa    MW: 55078.9 Da    PI: 6.6169
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041431.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.3e-13357403455
                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  EcC041431.20 357 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYINDLQ 403
                   799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.8E-4246229IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.028353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-18356423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.77E-15356407No hitNo description
Gene3DG3DSA:4.10.280.104.1E-18357417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10357403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15359408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0004867Molecular Functionserine-type endopeptidase inhibitor activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGEKFWANED DKRVVESVVG REACELLISS GNAASDVTLP GDLGVQQGLA QLVEGSNWNY  60
AVFWHSASLR SGRITLIWGD GHCCDPKVGA AEDGSSHQNV KSDRVEKKEE LNKLVLQKFH  120
SSFGGSSDDN FAARLNGVSD VEMFYLSSMY FSFQSDSAYG PMGSLKANRV IWASDAPTCL  180
DHYQSRSFLA KSAGFQTVAF VPLKNGVVEL GSVKVIPEEQ KVVEMVRTLL GGPASNKTKV  240
LPKIFGQELS LGGVKPQSVT INFSPKVEDD PMFPSETFDA QRVDSNQFHG GTSNGYPSDN  300
EAKLFSHSNQ IVIGGFSPQT RMSGLEQHKD ESSHHADDRK PRKRGRKPAN GREEPLNHVE  360
AERQRREKLN QRFYALRAVV PNISKMDKAS LLGDAITYIN DLQTKIKVLE TEKDMVNGTH  420
NPQLVPDVQV RHDDTVVTVS CPLEAHPASE VIKTLRNHQV APECDVSMKD GGNEVMHTFS  480
IRTQVGGAEQ LKEKLVAALS K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-29351413264Transcription factor MYC2
5gnj_B1e-29351413264Transcription factor MYC2
5gnj_E1e-29351413264Transcription factor MYC2
5gnj_F1e-29351413264Transcription factor MYC2
5gnj_G1e-29351413264Transcription factor MYC2
5gnj_I1e-29351413264Transcription factor MYC2
5gnj_M1e-29351413264Transcription factor MYC2
5gnj_N1e-29351413264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1338346RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By UV treatment. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038016.10.0PREDICTED: transcription factor bHLH3
SwissprotO234871e-170BH003_ARATH; Transcription factor bHLH3
TrEMBLA0A059A6S50.0A0A059A6S5_EUCGR; Uncharacterized protein
STRINGXP_010038016.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66112741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-158bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]