PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041441.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 234aa    MW: 25946.6 Da    PI: 5.5551
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041441.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116890123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+C+ C + F++   L  H+++H
  EcC041441.30 68 YTCSFCRREFRSAQALGGHMNVH 90
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-66595No hitNo description
SMARTSM003550.00616890IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-56891IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2196895IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MVAQLKNFDA ALQELEEKKK NEIDPSSSIG SWMWNPSAAQ EDDDSWEVRA FAEDTSNIMG  60
ATWPPRSYTC SFCRREFRSA QALGGHMNVH RRDRAKLHQS QFRPLANQNS PFASCSSPSS  120
STLIFPNQEF GYPGGGLCFL YQLPHPTGIF DPVKANAACL ESTPAVLSIS PYPPSPSVNF  180
PMQSQGNNSS HHYSSNEAHG SAVVDSYNCR NTSSKCEDPE KEEELDLELR LGHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-136390229superman protein
2l1o_A2e-136390229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053607.11e-133PREDICTED: transcriptional regulator SUPERMAN
TrEMBLA0A059CIB51e-131A0A059CIB5_EUCGR; Uncharacterized protein
STRINGXP_010053607.11e-132(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-36C2H2 family protein