PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041751.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 258aa    MW: 28858.8 Da    PI: 7.7968
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041751.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-10147236278
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegD 78 
                   +k+l++sd ++++rl +p+  ++++             k+ e+ ++++ de+   + ++ + y+ +sg+yvl+++W keFv+  gL egD
  EcC041751.10 147 KKTLKKSDLGQLSRLLIPRAAVATYvlpcmdeerarRVKSSEGAEVVVWDEDThSEHRLVFAYWASSGSYVLKGCWmKEFVQRRGLAEGD 236
                   6999************************99888877444457889999998776667777777*************668**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
SuperFamilySSF1019361.45E-12144245IPR015300DNA-binding pseudobarrel domain
CDDcd100175.86E-15146254No hitNo description
Gene3DG3DSA:2.40.330.102.0E-13147243IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-7148236IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MKLVDPFTLE LPPTGDVPRG ELHTLLPSIG SSSCVSFLHD HERNHKEEGR ETSSAAVVVP  60
ARVFFPLTPD PTRGYLDTKE RSAAPARPER KSKASLTDDG TLTVDKKAKR CRSQKGKRGA  120
SECEVEEERC GDVSTELVLR YDPYKIKKTL KKSDLGQLSR LLIPRAAVAT YVLPCMDEER  180
ARRVKSSEGA EVVVWDEDTH SEHRLVFAYW ASSGSYVLKG CWMKEFVQRR GLAEGDEIGI  240
CWDPIASKLD FSLLHKAN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041685.11e-177PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5C51e-159A0A059C5C5_EUCGR; Uncharacterized protein
STRINGXP_010041685.11e-177(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM456952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.14e-23B3 family protein