PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC041979.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YA
Protein Properties Length: 82aa    MW: 8954.13 Da    PI: 10.1032
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC041979.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA47.65.6e-1526513358
     CBFB_NFYA 33 ksrkpylheSRhkhAlrRpRgsgGrF 58
                  +  +pylheSRh+hA+rR+RgsgGrF
  EcC041979.10 26 HDLQPYLHESRHQHAMRRARGSGGRF 51
                  5669*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.0E-5154IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115217.04154IPR001289Nuclear transcription factor Y subunit A
PfamPF020458.8E-132851IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0030247Molecular Functionpolysaccharide binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
AYSFVGISHA RMLLPLNLVE AKGPVHDLQP YLHESRHQHA MRRARGSGGR FLDPSKINAS  60
NYAAEEKGTN SAPALSPNLP VH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051330.11e-25PREDICTED: nuclear transcription factor Y subunit A-9-like
TrEMBLA0A059AAP64e-20A0A059AAP6_EUCGR; Uncharacterized protein
STRINGXP_010051330.15e-25(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-12nuclear factor Y, subunit A9