PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042108.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 98aa    MW: 11259.4 Da    PI: 9.4744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042108.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000416580621
                  TTEEESSHHHHHHHHH CS
       zf-C2H2  6 CgksFsrksnLkrHir 21
                  C+ sFs++++L +Hi 
  EcC042108.10 65 CTLSFSNWMMLCTHIL 80
                  **************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.20.20.1006.1E-18162IPR023210NADP-dependent oxidoreductase domain
SuperFamilySSF514301.31E-13267IPR023210NADP-dependent oxidoreductase domain
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
MNPMWQQQKL RKFCKEKGIH ITAYSPLGAK GTFWGTNRVM ECEVLEEIAK AKGKTHGQVV  60
INLLCTLSFS NWMMLCTHIL IRMINLDTWS SQVKILCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3h7u_A2e-13261204263Aldo-keto reductase
5jh1_A2e-13261179238Aldose reductase, AKR4C7
5jh2_A2e-13261180239Aldose reductase, AKR4C7
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the reduction of a 3''-keto intermediate during the biosynthesis of 2'-deoxymugineic acid (DMA) from L-Met. Involved in the formation of phytosiderophores (MAs) belonging to the mugineic acid family and required to acquire iron. {ECO:0000269|PubMed:16926158}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated under iron-deficient conditions in root tissues. {ECO:0000269|PubMed:16926158}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010043909.12e-34PREDICTED: non-functional NADPH-dependent codeinone reductase 2
SwissprotB4F9A43e-22DMAS1_MAIZE; Deoxymugineic acid synthase 1
TrEMBLA0A059D5V74e-33A0A059D5V7_EUCGR; Uncharacterized protein
STRINGXP_010043909.17e-34(Eucalyptus grandis)
Publications ? help Back to Top
  1. Bashir K, et al.
    Cloning and characterization of deoxymugineic acid synthase genes from graminaceous plants.
    J. Biol. Chem., 2006. 281(43): p. 32395-402
    [PMID:16926158]
  2. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  3. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]