PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042117.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 232aa    MW: 25895.2 Da    PI: 9.7996
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042117.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.82.2e-23190231142
                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-S CS
          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversa 42 
                   ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver a
  EcC042117.10 190 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLA 231
                   59*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-24175230IPR003657WRKY domain
SuperFamilySSF1182902.88E-21182231IPR003657WRKY domain
PROSITE profilePS5081122.309185232IPR003657WRKY domain
SMARTSM007744.3E-17190232IPR003657WRKY domain
PfamPF031068.3E-18191229IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSTTATSTQG MLSQAAAPTM LEDQNLPSQL GFYSIFPSSM GSLASCSSSL CFNQTLKSLF  60
TLPSSLVSPD PPSNSNNNNL TLITETLLSS TAPHKQRENL QTPSELLGGP QLLSLQRSTP  120
NLWAWGELSD QSSLVMRSSS GGGDHGDHYR DHHHHQSMGV SALKMKKIKG RRKVREPRFC  180
FKTMSDVDVL DDGYKWRKYG QKVVKNTQHP RSYYRCTQDN CRVKKRVERL AE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-17181231858Probable WRKY transcription factor 4
2lex_A1e-17181231858Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027754.11e-173PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 13
SwissprotQ9SVB73e-46WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A059AKP81e-172A0A059AKP8_EUCGR; Uncharacterized protein
STRINGXP_010027754.11e-173(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61062746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.13e-44WRKY DNA-binding protein 13