PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042303.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 371aa    MW: 41387.9 Da    PI: 4.6993
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042303.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-102973371055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   rrRR+riN+++  L+ l+P+       K++ +++Le+Av+Y+k Lq
  EcC042303.30 297 RRRRARINERLRILQNLVPNG-----SKVDISTMLEEAVHYVKFLQ 337
                   9*******************5.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.84E-14285351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.894287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12291347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-11293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7297337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-7303341No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0009507Cellular Componentchloroplast
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0019843Molecular FunctionrRNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDILGVSGDE EWDYLSLFPS TGELIDFTPY VPGQYPFSHE QDTEYNLQIP PFSIDPELNT  60
NFAGMSGNSH YPLVLNPDSH TVAQESSYLT GKSSCFVVSS SECEDGIASN NHMQLANEIS  120
PYYDAFYNDG YNSNSFVSEL SGTLMEEGTC VKEMHSERRG CLGNNQTEDV SMPLMRLQLE  180
RRSSRLDNID VEAGHSTCID VSENMKKRPR TARDLRKKNN SPRNAKKLLS DDSDGDESNV  240
RPNRSRGCDG EDGNSGELSG EVTPPFKAST TLTENGSMGK IKATKGSATD SQSLYARRRR  300
ARINERLRIL QNLVPNGSKV DISTMLEEAV HYVKFLQLQI KLLSSDELWM YAPLAYNGMD  360
VNLSHITFPQ L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205217KKRPRTARDLRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018730944.10.0PREDICTED: transcription factor bHLH85-like
STRINGXP_010059844.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.13e-36root hair defective 6-like 4