PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042463.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 194aa    MW: 22945.8 Da    PI: 8.3312
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042463.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.82.1e-40101401128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                   lp+G+rFhPtdee v++yLk++v+g   +   +i++vdi++++Pw+Lp+        +++ + +ew+fF+++       ++ +r+t sgyWk+tg+d
  EcC042463.10  10 LPVGYRFHPTDEEYVDYYLKNRVRGFIDHP-CIIPDVDICRWDPWELPQkfhgesiiRLDDKVQEWWFFCPQTP-----QQVKRSTPSGYWKKTGTD 100
                   799*********************988555.58***************6477777665555778*******866.....5789************** PP

           NAM  90 kevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++v+++ +++++g kktLvf++gr ++g+kt+Wv+hey+l
  EcC042463.10 101 RNVKARdTNRVIGSKKTLVFHTGRGSRGVKTNWVIHEYHL 140
                   ****9977788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-457157IPR003441NAC domain
PROSITE profilePS5100545.95510157IPR003441NAC domain
PfamPF023655.9E-2511140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MGNVIIPNNL PVGYRFHPTD EEYVDYYLKN RVRGFIDHPC IIPDVDICRW DPWELPQKFH  60
GESIIRLDDK VQEWWFFCPQ TPQQVKRSTP SGYWKKTGTD RNVKARDTNR VIGSKKTLVF  120
HTGRGSRGVK TNWVIHEYHL PANELNRNYV LCRLKHKRDE KADNSTKELE QGANIWAGWD  180
SDLRQPDHED SFHM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-31916014171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065925.11e-143PREDICTED: uncharacterized protein LOC104453109 isoform X1
RefseqXP_010065926.11e-143PREDICTED: uncharacterized protein LOC104453109 isoform X2
TrEMBLA0A059BC531e-103A0A059BC53_EUCGR; Uncharacterized protein
STRINGXP_010065925.11e-142(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2067726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.15e-44NAC transcription factor-like 9