PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC042939.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family TALE
Protein Properties Length: 207aa    MW: 23814.7 Da    PI: 6.7994
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC042939.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-081441772154
                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   k +yp++e++++L +++gL+ +q+ +WF N+R +
  EcC042939.10 144 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 177
                   469*****************************87 PP
2ELK28.92.5e-1098119122
           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                   ELKh+L+++Y+++++++++E++
  EcC042939.10  98 ELKHELKQGYKEKIIDIREEIL 119
                   9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012564.6E-13141IPR005541KNOX2
PfamPF037919.5E-13240IPR005541KNOX2
SMARTSM011880.002498119IPR005539ELK domain
PfamPF037894.1E-598119IPR005539ELK domain
PROSITE profilePS512139.86598118IPR005539ELK domain
PROSITE profilePS5007111.855118181IPR001356Homeobox domain
SuperFamilySSF466892.87E-16120184IPR009057Homeodomain-like
SMARTSM003897.2E-11120185IPR001356Homeobox domain
CDDcd000862.38E-11121182No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25125182IPR009057Homeodomain-like
PfamPF059206.9E-18138177IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
THYVLLLCSF KEQLQQHVRV HAMEAVMACW EIEQSLQSLT GVSPGEGTGA TMSDDEDDQV  60
DSDANLFDGS LDGTDSLGFG PLIPTETERS LMERVRQELK HELKQGYKEK IIDIREEILR  120
KRRAGKLPGD TTSVLKQWWQ THSKWPYPTE EDKARLVQET GLQLKQINNW FINQRKRNWH  180
SNPSTSTVLK SKRKRSNAGE NSSDRFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A7e-13121185872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174194RKRNWHSNPSTSTVLKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015972063.11e-144homeobox protein knotted-1-like 3 isoform X2
RefseqXP_016162755.11e-144homeobox protein knotted-1-like 3 isoform X2
RefseqXP_020960849.11e-144homeobox protein knotted-1-like 3 isoform X1
RefseqXP_020981072.11e-144homeobox protein knotted-1-like 3 isoform X1
RefseqXP_025659831.11e-144homeobox protein knotted-1-like 3 isoform X1
SwissprotP480001e-134KNAT3_ARATH; Homeobox protein knotted-1-like 3
SwissprotP480011e-134KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A444YVA11e-143A0A444YVA1_ARAHY; Uncharacterized protein
STRINGVIT_04s0008g06130.t011e-142(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-129KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]