PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC043452.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRF
Protein Properties Length: 513aa    MW: 55207.6 Da    PI: 8.1725
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC043452.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.6e-23217260144
           WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                   d+ep+rCrRtDGKkWRCsr+v + +k+CErH h++r rsrk++e
  EcC043452.30 217 DPEPWRCRRTDGKKWRCSRDVAPHQKYCERHSHKNRPRSRKPVE 260
                   79***************************************987 PP
2QLQ262.8e-10163201236
           QLQ   2 aFTaaQlql..LksQilAyKyLaanqPvP..peLlqaiq 36 
                   +FTaaQ+q+  +++Q + +K+++ ++PvP  peL+++i+
  EcC043452.30 163 PFTAAQWQEmdMERQSMMLKHMLTSVPVPagPELILPIT 201
                   9********555*****************6667777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5166724.527217261IPR014977WRC domain
PfamPF088792.2E-18218260IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0019222Biological Processregulation of metabolic process
GO:0009941Cellular Componentchloroplast envelope
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MGTRNGNERG MMMVVSAGEE ECDVGLGLRT QQPKNGDGYS RKKTTPVMMS MSLPPPPHHH  60
HPHHHHQHHH HLYHQQYTLS PSSSGRGGVA GAAGEYYGGL GGSVLSGASN HHLACVGGEA  120
AAAATLLAAG SASADSSSSA AAAAAPVFDS SGKMAASTNA RVPFTAAQWQ EMDMERQSMM  180
LKHMLTSVPV PAGPELILPI TRSLPTVLPP QSNRGSDPEP WRCRRTDGKK WRCSRDVAPH  240
QKYCERHSHK NRPRSRKPVE LQADYTKAAN ATTKKSNVTT TNSQSLSSCQ NPQFLNQTPI  300
PSSVFPTAAA SAYDQPRGLE WFMKAETIPS QEDYHHHQQP MHAACNRIDP FHLKQPHMPL  360
SSYSDYGSTH ELHETRHFID AWSAPHRDDS SNRAASVSAG KKMPVSSLSL TMCGIVEEDS  420
KNTDMGPGLM GGEREKSGDL RPPHWMMSPA GSWMGSTTPG GPLAEALCLG TANASSARMA  480
AACEATPQGR FSVTPTSSRS SSKDEGHELN LIS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010053063.10.0PREDICTED: growth-regulating factor 8
TrEMBLA0A059CHA70.0A0A059CHA7_EUCGR; Uncharacterized protein
STRINGXP_010053063.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78362637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.11e-36growth-regulating factor 8