PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC043995.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 192aa    MW: 21307.7 Da    PI: 10.016
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC043995.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3345.4e-1181188297
                   EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEE CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFk 83 
                   +k l++sd + ++rl + ++f+++h             +    ++ +++++d +   + ++ + ++ +sg+yvl+ GW keFvk  gL +gD v ++
  EcC043995.10  81 KKRLKQSDLGDLSRLLIGRDFVTSHllrwmskemvrqvE--GGKGADVIVRDVDTcSEHRLVFVFWASSGSYVLKVGWiKEFVKRRGLVTGDEVGIY 175
                   58899***********************98888777542..236779999998777777888888*************899*************999 PP

                   E-SS.SEE..EEEEE CS
            B3  84 ldgr.sefelvvkvf 97 
                      + s  +++++++
  EcC043995.10 176 W--DpSASKFHFSLL 188
                   5..445554577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1379188IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-1480188IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-1680188No hitNo description
PfamPF023621.0E-782186IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKLIDFLGPA SPPIGDVLKS RDEGAGDISP AIVVAAREFF PLAPDQNMKE VGDPFRGIAP  60
TQRKRKSVAS LADAESLIVI KKRLKQSDLG DLSRLLIGRD FVTSHLLRWM SKEMVRQVEG  120
GKGADVIVRD VDTCSEHRLV FVFWASSGSY VLKVGWIKEF VKRRGLVTGD EVGIYWDPSA  180
SKFHFSLLHK AN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16166QRKRKS
26284RKRKSVASLADAESLIVIKKRLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058715.21e-117PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059CBK61e-118A0A059CBK6_EUCGR; Uncharacterized protein
STRINGXP_010059748.11e-119(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.13e-23B3 family protein