PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC044048.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 84aa MW: 10096.7 Da PI: 4.3983

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC044048.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	49.1	1.8e-15	4	66	1	62
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew....yfFs 62 lp G+rF Pt+eelv++yL++++eg + +++++++ +d+y+++Pw+Lp+++ + w y F+ EcC044048.10 4 LPLGYRFYPTEEELVSFYLRNQLEGLRQDMHHAVPVLDVYDIDPWQLPSML---DPLWsfliYCFA 66 699*************************999*************543...233322224444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-16	3	68	IPR003441	NAC domain
PROSITE profile	PS51005	17.436	4	84	IPR003441	NAC domain
Pfam	PF02365	1.3E-7	5	68	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MGELPLGYRF YPTEEELVSF YLRNQLEGLR QDMHHAVPVL DVYDIDPWQL PSMLDPLWSF 60 LIYCFARRMA GGPLFFSFFL FFFF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015771.2	3e-20	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-16	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U8P0V9	5e-18	A0A1U8P0V9_GOSHI; NAC domain-containing protein 90-like
TrEMBL	A0A2P5YN99	5e-18	A0A2P5YN99_GOSBA; Uncharacterized protein
TrEMBL	L7X5Z3	5e-18	L7X5Z3_GOSHI; NAC protein 13
STRING	Gorai.001G122800.1	1e-18	(Gossypium raimondii)
STRING	EOY33390	1e-18	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	8e-19	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]