PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC044152.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24747.8 Da    PI: 5.3912
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC044152.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.7e-20651651
                  HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  +s   +tf+kRrn ++KKA+ LS LCdaev +iifs tg+lyeyss
  EcC044152.20  6 SSSDLITFAKRRNSLMKKAKDLSQLCDAEVGIIIFSCTGQLYEYSS 51
                  566679**************************************96 PP
2K-box76.66.5e-26791641499
         K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   a+ l++e+a+L+++++ Lq+ +R+l+GedL+ Ls+k++q+Le+qLe sl++iR +K++++++qi+el +k + +++en +L++k +
  EcC044152.20  79 AKVLEEEIANLNRQLQGLQEYHRQLMGEDLSGLSVKDIQNLENQLEMSLSTIRLQKEQIMTDQINELHRKRNLIHQENIELQEKCQ 164
                   567899****************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.105153IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-11452IPR002100Transcription factor, MADS-box
PfamPF003192.8E-17849IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-211065IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-131530IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-133051IPR002100Transcription factor, MADS-box
PfamPF014864.3E-2579164IPR002487Transcription factor, K-box
PROSITE profilePS5129714.7179169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MNPHSSSSDL ITFAKRRNSL MKKAKDLSQL CDAEVGIIIF SCTGQLYEYS SSSMDSVIER  60
YNNLKREAQP ELDQPTFDAK VLEEEIANLN RQLQGLQEYH RQLMGEDLSG LSVKDIQNLE  120
NQLEMSLSTI RLQKEQIMTD QINELHRKRN LIHQENIELQ EKCQIHREGS SSSEANRFLV  180
SYGINTGDDT DIPIPSPSRR PLRRNRSTTP PVTTEL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029960.11e-137PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010029961.11e-137PREDICTED: MADS-box transcription factor 23 isoform X1
RefseqXP_010029962.11e-137PREDICTED: MADS-box transcription factor 23 isoform X1
SwissprotQ6EP493e-57MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A059ATD01e-112A0A059ATD0_EUCGR; Uncharacterized protein
STRINGXP_010029960.11e-137(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.18e-59AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]