PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC044554.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 434aa MW: 45408.9 Da PI: 8.1689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC044554.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	5.9e-12	232	277	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq EcC044554.10 232 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 277 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.93E-13	225	281	No hit	No description
SuperFamily	SSF47459	5.1E-17	225	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	227	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	229	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	232	277	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	233	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
SLLFLCLSLS SSSSSSFSFF QHAALQQRDA DPQLPXXXXX XXXXXXXXXX XXXXXXXXXX 60 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA 120 AAAKAMLLQQ MLMAGGDGSP SSSHFKSANL GGDSSVQALF NGFAGSLHGN GQTSNHSQHF 180 SLPQGGSMQA SPNFSAQAAA ASGSGGTAGT AAAPGQPRQR VRARRGQATD PHSIAERLRR 240 ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD 300 MSSEGGGGGD GSQANGSGRS SSNGGASGDS LTVSEHQVAK LMEEDMGSAM QYLQGKGLCL 360 MPISLATAIS TATCQSRIPL PSPSAHHHHH HQGPGDGPTS PSVSALTVQS AALAGGAAGG 420 GGVDAKDAAS ISKP

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

SLLFLCLSLS SSSSSSFSFF QHAALQQRDA DPQLPXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXA  120
AAAKAMLLQQ MLMAGGDGSP SSSHFKSANL GGDSSVQALF NGFAGSLHGN GQTSNHSQHF  180
SLPQGGSMQA SPNFSAQAAA ASGSGGTAGT AAAPGQPRQR VRARRGQATD PHSIAERLRR  240
ERIAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD  300
MSSEGGGGGD GSQANGSGRS SSNGGASGDS LTVSEHQVAK LMEEDMGSAM QYLQGKGLCL  360
MPISLATAIS TATCQSRIPL PSPSAHHHHH HQGPGDGPTS PSVSALTVQS AALAGGAAGG  420
GGVDAKDAAS ISKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	236	241	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010048828.1	1e-164	PREDICTED: transcription factor bHLH66
Swissprot	Q9ZUG9	4e-92	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A059CSL7	1e-163	A0A059CSL7_EUCGR; Uncharacterized protein
STRING	XP_010048828.1	1e-164	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-61	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]