PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC045129.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

G2-like

Protein Properties

Length: 142aa MW: 16007.5 Da PI: 10.4654

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC045129.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	67	120	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++F++aveqLGG++kAtPk +l++m+vkgLt++hvkSHLQ+YR+ EcC045129.10 67 PRLRWTPDLHQCFMHAVEQLGGEDKATPKMVLQMMSVKGLTISHVKSHLQMYRS 120 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.596	63	123	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-32	63	122	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.96E-17	64	121	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-25	67	121	IPR006447	Myb domain, plants
Pfam	PF00249	6.4E-9	68	119	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MVHGEESSLK KSNSPSSSVV NVDGPSSESS NLRGDRKRGN EMLALLPLGT ISRRPSVVRP 60 YVRSKTPRLR WTPDLHQCFM HAVEQLGGED KATPKMVLQM MSVKGLTISH VKSHLQMYRS 120 MKHEQIMQGH LYNSTTFLCI FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-20	68	123	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018728305.1	4e-87	PREDICTED: uncharacterized protein LOC108959263 isoform X1
Refseq	XP_018728306.1	4e-87	PREDICTED: uncharacterized protein LOC108959263 isoform X2
TrEMBL	A0A059CF66	2e-68	A0A059CF66_EUCGR; Uncharacterized protein
STRING	VIT_00s1624g00010.t01	4e-46	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-29	G2-like family protein