PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC045149.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 241aa MW: 27074.5 Da PI: 8.3

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC045149.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.6	2e-39	4	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 p GfrF Pt+eel+++yL+++++g k ++++vi+ ++i+++ePw+Lp+ +++++++w+fF++ ++++a+g r++r+ ++gyWkatg+ v+ EcC045149.10 4 PTGFRFYPTEEELISFYLHNQLHGLKqDKIHRVIPVLHIFDTEPWNLPQlageLCREDREQWFFFAPMQEREARGGRPSRSLATGYWKATGSPGYVY 100 89*******************9884666778***********656654445677********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++++g+kk++vfy g+apkg+kt+W ++ yr+ EcC045149.10 101 SPDNKVIGVKKSMVFYVGKAPKGRKTQWKLNKYRA 135 *******************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-43	2	166	IPR003441	NAC domain
PROSITE profile	PS51005	43.669	3	167	IPR003441	NAC domain
Pfam	PF02365	5.9E-19	4	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MEYPTGFRFY PTEEELISFY LHNQLHGLKQ DKIHRVIPVL HIFDTEPWNL PQLAGELCRE 60 DREQWFFFAP MQEREARGGR PSRSLATGYW KATGSPGYVY SPDNKVIGVK KSMVFYVGKA 120 PKGRKTQWKL NKYRAIELSP TNPNSSSSNI SIPKLKREFT LCRVYVVSGT SRAFDRRPLE 180 VVAGETTIQG DGCAASSGGR GAGCADVSSS GLVAGDVGSS NQWETASLEE PMWDWDQLNW 240 L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-31	1	165	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-31	1	165	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-31	1	165	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-31	1	165	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	3e-31	1	165	18	166	NAC domain-containing protein 19
3swm_B	3e-31	1	165	18	166	NAC domain-containing protein 19
3swm_C	3e-31	1	165	18	166	NAC domain-containing protein 19
3swm_D	3e-31	1	165	18	166	NAC domain-containing protein 19
3swp_A	3e-31	1	165	18	166	NAC domain-containing protein 19
3swp_B	3e-31	1	165	18	166	NAC domain-containing protein 19
3swp_C	3e-31	1	165	18	166	NAC domain-containing protein 19
3swp_D	3e-31	1	165	18	166	NAC domain-containing protein 19
4dul_A	3e-31	1	165	15	163	NAC domain-containing protein 19
4dul_B	3e-31	1	165	15	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034219.1	1e-158	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	8e-94	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A059AAV3	1e-178	A0A059AAV3_EUCGR; Uncharacterized protein
STRING	XP_010034219.1	1e-157	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-90	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]