PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045246.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 224aa    MW: 24289.7 Da    PI: 6.6357
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045246.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-11653347
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                      W+ eEd+ + +a++++  +     W++Ia++++ g++l+++k+++q++
     EcC045246.30  6 EWSREEDKAFENAIAMHWVEdskePWDKIASMVP-GKSLEELKLHYQML 53
                     7****************99999999*********.************87 PP
2Myb_DNA-binding39.61.2e-12135179347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
     EcC045246.30 135 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 179
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.395258IPR017884SANT domain
SMARTSM007171.2E-7356IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-9660IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5654IPR009057Homeodomain-like
CDDcd001671.03E-9654No hitNo description
PfamPF002493.2E-8653IPR001005SANT/Myb domain
PROSITE profilePS5129417.282127184IPR017930Myb domain
SuperFamilySSF466894.64E-17130185IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-17132182IPR006447Myb domain, plants
SMARTSM007172.3E-10132182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-11133178IPR009057Homeodomain-like
CDDcd001671.20E-9135180No hitNo description
PfamPF002494.6E-11135179IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSSALEWSRE EDKAFENAIA MHWVEDSKEP WDKIASMVPG KSLEELKLHY QMLVDDVNAI  60
DAGQIQVPNY VSDETSSSSA AKDGPGFAGG GGGSAGDKRS NCGYGGGFSG LSHESGGHGG  120
KGGSRSDQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF  180
IRLNSMNRDR RRSSIHDITS VNNGDVSAPQ APITGQQANP NPPS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018721495.11e-163PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN63e-80SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A059A5W51e-161A0A059A5W5_EUCGR; Uncharacterized protein
STRINGXP_010037352.11e-162(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35562861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-63MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]