PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045266.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 224aa    MW: 24613.7 Da    PI: 6.1621
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045266.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.6e-1764114155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   + y+GVr +  +g+Wv+e+r+p++   + r++lg+f ta++Aa+a++ a+++l+g
  EcC045266.20  64 PVYRGVRLRD-SGKWVCEVREPRK---KSRIWLGTFPTADMAARAHDVAALALRG 114
                   68*******9.7******999843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-1364114IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2065124IPR016177DNA-binding domain
SMARTSM003803.5E-2965128IPR001471AP2/ERF domain
PROSITE profilePS5103221.86565122IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.5E-3165124IPR001471AP2/ERF domain
PRINTSPR003672.9E-86677IPR001471AP2/ERF domain
CDDcd000184.07E-3066124No hitNo description
PRINTSPR003672.9E-888104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010183Biological Processpollen tube guidance
GO:0015074Biological ProcessDNA integration
GO:0046777Biological Processprotein autophosphorylation
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MNSSSYISHP HSFSFDFAEP PLSLLLSHDR SAAPGNFSGE EVRLASDHPK KPAGRKKFRE  60
TRHPVYRGVR LRDSGKWVCE VREPRKKSRI WLGTFPTADM AARAHDVAAL ALRGQSACLN  120
FADSAWRLPV PASPNTKDIQ KAAAKAAEAF QLVESEDVMS GNEKKLHSEE GVLYDEEDIF  180
GMPGLLANMA EGMLLSPPEC SGDLYAGLDD GNLDAYASLW SYSM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15631211271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010061558.11e-164PREDICTED: dehydration-responsive element-binding protein 1B-like isoform X1
SwissprotQ9FJ936e-69DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLQ306S71e-162Q306S7_EUCGU; C-repeat binding facor 1b
STRINGXP_010061558.11e-163(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-55C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]