PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045291.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 323aa    MW: 35889.7 Da    PI: 6.4271
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045291.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-10253301355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  EcC045291.20 253 NSHSLAERVRREKISERMRMLQELVPGC----NKITGKAVMLDEIINYVQSLQ 301
                   58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-11248305No hitNo description
SuperFamilySSF474591.07E-15248307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.567250300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-16251305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-7253301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-10256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MEGCDGGDVG FRHGGDNFLN FPHSGVTPSS VREEFSGMAI NPFVSSGWDP LVSLTQSYRF  60
ANPSMASGFP FSSHPGIMEN QRSGGDFPPP LGHNLSALTE QVSFERLPCS ESRSYLDAVA  120
YFGLPDIANS GCPPNYGSQR EDDHDGSEGA SANNKLSQDC RIEEDGERSS PSVKRRKNAP  180
AHDTIYDSKE VKRDPSKVNS DVPKEWDEKK QKNEQTLHPN SQGKQTGKQV RDNVEAPKEN  240
YIHVRARRGQ ATNSHSLAER VRREKISERM RMLQELVPGC NKITGKAVML DEIINYVQSL  300
QQQVEVRQLF SYSGIRIVSL STE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059819.10.0PREDICTED: transcription factor bHLH74
TrEMBLA0A059BJ670.0A0A059BJ67_EUCGR; Uncharacterized protein
STRINGXP_010059819.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-48bHLH family protein