PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045323.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family WRKY
Protein Properties Length: 256aa    MW: 28836.6 Da    PI: 9.3244
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045323.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.11.2e-2599154458
                   SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
          WRKY   4 gynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                    y+WrKYGqK+ ++++ p +Y++C++a gCpvkkkv+r+ +dp+v++ tYegeHnh
  EcC045323.20  99 DYHWRKYGQKVRRDNPSPTAYFKCSFApGCPVKKKVQRTVDDPSVLVATYEGEHNH 154
                   59************************99**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.33991157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-2494156IPR003657WRKY domain
SuperFamilySSF1182907.72E-2296155IPR003657WRKY domain
SMARTSM007741.9E-2697156IPR003657WRKY domain
PfamPF031067.5E-21100154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
AGALVKEYHR VSHENRNLTE MLTLMHESYN VLHNHLIVLR NKSELGARRK RKHEANVTAE  60
SCSYEEDQIF KTPKDSFKPK ISKIHSQTDA PDISVVVKDY HWRKYGQKVR RDNPSPTAYF  120
KCSFAPGCPV KKKVQRTVDD PSVLVATYEG EHNHLSPCQL AISLGSDKQG LNLGAPPIPL  180
PSKSTSSSPR STPDLIRLGF DTLSAKRGQE TEEAAAFQQS LEEQMASPFK RDPNFTAAFT  240
AVISGKIFDQ ARMEWW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-17921571377Probable WRKY transcription factor 4
2lex_A3e-17921571377Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010050821.11e-151PREDICTED: probable WRKY transcription factor 40
TrEMBLA0A059CRL51e-126A0A059CRL5_EUCGR; Uncharacterized protein
STRINGXP_010050821.11e-150(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-61WRKY DNA-binding protein 40