PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045409.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GRAS
Protein Properties Length: 129aa    MW: 14578.6 Da    PI: 4.5417
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045409.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS69.75.6e-2211237133
          GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
                   e+A+a+ +g+   a++++ rls + +p  ++ q+l  y++  L++r++      +   pps ++   ++e++ + + ++e+sP++ +++++aN+aIl
  EcC045409.10   1 EAATAIYEGKVDVASEIMRRLSAMPNPMSNSKQKLMEYMLSVLKSRVSP-----V-DYPPSVAE-LFTEEHVLSARSLYELSPCFWLGFMAANNAIL 90 
                   589*********************************************9.....2.23333332.236777888899******************** PP

          GRAS 104 eavege...ervHiiDfdisqGlQWpaLlqaLa 133
                   ea++++   +++H+ Dfdi+   Q+ +Ll +++
  EcC045409.10  91 EAASEQpstNKLHVFDFDIGWEQQYNNLLLEIS 123
                   ****9999999*****************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.2761129IPR005202Transcription factor GRAS
PfamPF035141.9E-191123IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
EAATAIYEGK VDVASEIMRR LSAMPNPMSN SKQKLMEYML SVLKSRVSPV DYPPSVAELF  60
TEEHVLSARS LYELSPCFWL GFMAANNAIL EAASEQPSTN KLHVFDFDIG WEQQYNNLLL  120
EISYNMGLH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018727332.18e-76PREDICTED: scarecrow-like protein 8 isoform X1
RefseqXP_018727334.17e-76PREDICTED: scarecrow-like protein 8 isoform X2
SwissprotQ9FYR73e-29SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A059DD352e-63A0A059DD35_EUCGR; Uncharacterized protein
STRINGXP_010066861.11e-66(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-31SCARECROW-like 8