PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC045416.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

C2H2

Protein Properties

Length: 116aa MW: 13055.6 Da PI: 7.5073

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC045416.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	71	92	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp C+++F++ L H + H EcC045416.10 71 PCPVCDERFRSMRALFCHSKIH 92 5*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.055	70	97	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.17E-6	71	115	No hit	No description
PROSITE pattern	PS00028	0	72	92	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.003	72	94	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.039	102	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
DLLKRTIGVR SHEVSHSQEE TGERESPLAI DNGLEDGSSS ADERRLGYYL RENPKKTWKF 60 SKLKESAQEK PCPVCDERFR SMRALFCHSK IHSGKDDESG DCGKIFSSGR VLGGHM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010034406.1	3e-20	PREDICTED: uncharacterized protein LOC104423640
STRING	XP_010034401.1	2e-40	(Eucalyptus grandis)
STRING	XP_010034403.1	3e-40	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16241	9	13