PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC045469.40

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 199aa MW: 22878.8 Da PI: 7.5587

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC045469.40	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.9	3.4e-35	28	177	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k........................kvkaeekewyfFskrdkkyatgkr 73 ppG+ F P+d+el+ L++k+ g++l+ + ++++yk+ P++L + + +ekewyfF++rd+ky++gkr EcC045469.40 28 PPGMAFYPHDHELI-GLLHRKLCGQPLPPLLPLMDLNVYKHTPQQLSgQrlhlsssfynddmlvlscnlqelkGCGVREKEWYFFTTRDRKYKNGKR 123 89**********.89*****998788**********854899****99999998876553344899************* PP NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +nr + g+Wkat + +e+++ +g+++g k++Lv+y+g+ ++g+kt W+mhe+++ EcC045469.40 124 PNREAGGGFWKATWSAEEIVH-EGQVIGWKRSLVYYHGKPQTGVKTGWIMHEFAA 177 *****************.999**************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-33	23	182	IPR003441	NAC domain
PROSITE profile	PS51005	33.01	27	199	IPR003441	NAC domain
Pfam	PF02365	3.0E-18	28	176	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
METPERRESC GCGCERPMPH ASSAKRPPPG MAFYPHDHEL IGLLHRKLCG QPLPPLLPLM 60 DLNVYKHTPQ QLSGQRLHLS SSFYNDDMLV LSCNLQELKG CGVREKEWYF FTTRDRKYKN 120 GKRPNREAGG GFWKATWSAE EIVHEGQVIG WKRSLVYYHG KPQTGVKTGW IMHEFAAKDA 180 DYDDDDDNPN RTKSENDMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-28	28	175	21	143	NAC domain-containing protein 19
3swm_B	1e-28	28	175	21	143	NAC domain-containing protein 19
3swm_C	1e-28	28	175	21	143	NAC domain-containing protein 19
3swm_D	1e-28	28	175	21	143	NAC domain-containing protein 19
3swp_A	1e-28	28	175	21	143	NAC domain-containing protein 19
3swp_B	1e-28	28	175	21	143	NAC domain-containing protein 19
3swp_C	1e-28	28	175	21	143	NAC domain-containing protein 19
3swp_D	1e-28	28	175	21	143	NAC domain-containing protein 19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.3	2e-31	NAC family protein