PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045470.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 243aa    MW: 27872.7 Da    PI: 7.815
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045470.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.51.4e-4541351128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lppGfrFh tdeel+ +yLk+k+ g++  +  ++i+e+di+++ePw+Lp+  +++ ++ke++fF++ ++ky+++kr+ r+tk+gyWk tgk+++++s
  EcC045470.10   4 LPPGFRFHATDEELLIHYLKPKILGRPgERYYDMIPEIDICEFEPWQLPAmfCHRFNSKELFFFCRVKRKYSNSKRSDRTTKAGYWKVTGKERTIVS 100
                   79*************************6566788***************5345556889************************************** PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++e +g+kktLvfy+gr pkg++t+Wv hey+l
  EcC045470.10 101 EdTDEPIGIKKTLVFYTGRVPKGKRTNWVSHEYQL 135
                   967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-493158IPR003441NAC domain
PROSITE profilePS5100549.9164158IPR003441NAC domain
PfamPF023653.6E-235135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006511Biological Processubiquitin-dependent protein catabolic process
GO:0005783Cellular Componentendoplasmic reticulum
GO:0016020Cellular Componentmembrane
GO:0048471Cellular Componentperinuclear region of cytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0004842Molecular Functionubiquitin-protein transferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MRALPPGFRF HATDEELLIH YLKPKILGRP GERYYDMIPE IDICEFEPWQ LPAMFCHRFN  60
SKELFFFCRV KRKYSNSKRS DRTTKAGYWK VTGKERTIVS EDTDEPIGIK KTLVFYTGRV  120
PKGKRTNWVS HEYQLSPKCL GHNEYEMLPY VACRIKNKKE KKLMMGHAPT VSPEVYSSSP  180
HAPAVSPEVC SSSPHAYASN VSETPVNQEG DYSSFCNSPS DEVADNQEAV DAQPEVREAH  240
FIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-37315916166NO APICAL MERISTEM PROTEIN
1ut4_B2e-37315916166NO APICAL MERISTEM PROTEIN
1ut7_A2e-37315916166NO APICAL MERISTEM PROTEIN
1ut7_B2e-37315916166NO APICAL MERISTEM PROTEIN
3swm_A3e-37315919169NAC domain-containing protein 19
3swm_B3e-37315919169NAC domain-containing protein 19
3swm_C3e-37315919169NAC domain-containing protein 19
3swm_D3e-37315919169NAC domain-containing protein 19
3swp_A3e-37315919169NAC domain-containing protein 19
3swp_B3e-37315919169NAC domain-containing protein 19
3swp_C3e-37315919169NAC domain-containing protein 19
3swp_D3e-37315919169NAC domain-containing protein 19
4dul_A2e-37315916166NAC domain-containing protein 19
4dul_B2e-37315916166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010064990.11e-159PREDICTED: protein NTM1-like 9
TrEMBLA0A059DCT81e-162A0A059DCT8_EUCGR; Uncharacterized protein
STRINGXP_010065386.11e-162(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-50NAC transcription factor-like 9