PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045514.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 198aa    MW: 22198.9 Da    PI: 7.6141
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045514.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.6e-15108159155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++y+GV +++ rg+++Ae+rdp++ng  +r +lg++ t+ +Aa a+++a+ +++g
  EcC045514.40 108 CHYRGVKRRP-RGKYAAELRDPKKNG--ARRWLGTYETPWDAALAYDRAAFAMRG 159
                   79********.8**********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.70E-27108169No hitNo description
PfamPF008473.5E-10108159IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-27109168IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-20109168IPR016177DNA-binding domain
SMARTSM003804.8E-31109173IPR001471AP2/ERF domain
PROSITE profilePS5103220.969109167IPR001471AP2/ERF domain
PRINTSPR003676.3E-11110121IPR001471AP2/ERF domain
PRINTSPR003676.3E-11149169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MFARSSTISD SDAALLECIR QHLLNDDDFE TLAKIPENIR IHCPDSSFDA SLSPETTMPF  60
EVNDYNDADI NRGPPKDAVG FKSPSSLDGQ MVMEHGHPKV NEALPRGCHY RGVKRRPRGK  120
YAAELRDPKK NGARRWLGTY ETPWDAALAY DRAAFAMRGT KARLNFPHLI GCDEVQPVKV  180
TRKRHHAPEA ESSSLDPK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-27106174270ATERF1
3gcc_A9e-27106174270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115RGVKRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056401.11e-144PREDICTED: ethylene-responsive transcription factor 1
TrEMBLA0A059C5A31e-143A0A059C5A3_EUCGR; Uncharacterized protein
STRINGXP_010056401.11e-143(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-29ethylene-responsive element binding factor 13