PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC045559.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 219aa MW: 25090.2 Da PI: 8.3047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC045559.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.7	1.6e-38	54	183	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 p+GfrF+Ptd+el+ +yLk+kv+g+++++ +v+++vd+yk++P++L + + +e+ewyfF++rd+ky+ g+r+nr g+W+ k+ v EcC045559.20 54 PAGFRFDPTDQELIIHYLKAKVAGDPIPIGDVFADVDLYKFDPRTLIeNrkGAGIDEDEWYFFTPRDRKYQCGSRPNRCSPGGFWRVARKESVVRM- 149 89******************************************633334444888************************9999877777. PP NAM 96 kgelvglkktLvfykg.rapkgektdWvmheyrl 128 +++++g k+ L+fy+g ++++g +t mheyrl EcC045559.20 150 ENKTIGYKNLLAFYRGdSKRQGDRTALNMHEYRL 183 999*******9978899*********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.11E-44	50	214	IPR003441	NAC domain
PROSITE profile	PS51005	44.767	53	216	IPR003441	NAC domain
Pfam	PF02365	1.3E-20	54	183	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEKNDQSHNR DRDDQPEGMH VDGQLKVGVD PCTPSSSQES VASPPPPPSL ADFPAGFRFD 60 PTDQELIIHY LKAKVAGDPI PIGDVFADVD LYKFDPRTLI ENRKGAGIDE DEWYFFTPRD 120 RKYQCGSRPN RCSPGGFWRV ARKESVVRME NKTIGYKNLL AFYRGDSKRQ GDRTALNMHE 180 YRLKEDEKRD RTSIGGKKGV KDKRLDEWVL CKVYTPRHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-39	47	214	11	163	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-39	47	214	11	163	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-39	47	214	11	163	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-39	47	214	11	163	NO APICAL MERISTEM PROTEIN
3swm_A	6e-39	47	214	14	166	NAC domain-containing protein 19
3swm_B	6e-39	47	214	14	166	NAC domain-containing protein 19
3swm_C	6e-39	47	214	14	166	NAC domain-containing protein 19
3swm_D	6e-39	47	214	14	166	NAC domain-containing protein 19
3swp_A	6e-39	47	214	14	166	NAC domain-containing protein 19
3swp_B	6e-39	47	214	14	166	NAC domain-containing protein 19
3swp_C	6e-39	47	214	14	166	NAC domain-containing protein 19
3swp_D	6e-39	47	214	14	166	NAC domain-containing protein 19
4dul_A	5e-39	47	214	11	163	NAC domain-containing protein 19
4dul_B	5e-39	47	214	11	163	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010046701.1	1e-126	PREDICTED: NAC transcription factor ONAC010
TrEMBL	A0A059D9B1	1e-124	A0A059D9B1_EUCGR; Uncharacterized protein
STRING	XP_010041964.1	1e-130	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.2	2e-43	NAC domain containing protein 47