PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045614.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family LBD
Protein Properties Length: 121aa    MW: 12643.2 Da    PI: 8.9262
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045614.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.31.1e-3731119188
        DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                   +C aCk+lrrkC+++Cv+apyf a+q p++fa+vh++FGasn +kll+++p ++r da+ +l+yeA arardPvyG+vg+i++lqqq++
  EcC045614.10  31 PCGACKFLRRKCVRGCVFAPYFDADQgPAHFAAVHRVFGASNASKLLARVPAHRRLDAVVTLCYEALARARDPVYGCVGHIFALQQQVS 119
                   7************************999***********************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.72430121IPR004883Lateral organ boundaries, LOB
PfamPF031954.0E-3731119IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009561Biological Processmegagametogenesis
GO:0016192Biological Processvesicle-mediated transport
GO:0032012Biological Processregulation of ARF protein signal transduction
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0032588Cellular Componenttrans-Golgi network membrane
GO:0005086Molecular FunctionARF guanyl-nucleotide exchange factor activity
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MSNKNDNNTA SNCDPNGSSS SSTASGGGGG PCGACKFLRR KCVRGCVFAP YFDADQGPAH  60
FAAVHRVFGA SNASKLLARV PAHRRLDAVV TLCYEALARA RDPVYGCVGH IFALQQQVSA  120
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3721118197LOB family transfactor Ramosa2.1
5ly0_B2e-3721118197LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010056298.14e-81PREDICTED: LOB domain-containing protein 19
SwissprotO813227e-51LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A059C4188e-80A0A059C418_EUCGR; Uncharacterized protein
STRINGXP_010056298.11e-80(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-50LOB domain-containing protein 31