PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045631.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 165aa    MW: 18244.9 Da    PI: 5.9565
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045631.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.41.1e-1252159199
                   EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
            B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                   f k+ + sdv+k+ +rl +pk  ++++         ++  e ++ ++  ++ g+ + +k++ + +s+++vl + W++Fv++n+Lk  D+++++  + 
  EcC045631.10  52 FTKTISESDVNKQqSRLLIPKLDFKNFiqpllkdnvDL--EMGVPVQTFNTAGKAYPMKFKKWSGSKGHVLMDDWNKFVEENQLKPCDSLTIQAFRA 146
                   89999******99899********77799999764422..2445566677999********9*******************************8888 PP

                   .SEE..EEEEE-S CS
            B3  88 .sefelvvkvfrk 99 
                    ++++l++ + +k
  EcC045631.10 147 vQTGKLCFLISSK 159
                   8999999988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1549148IPR015300DNA-binding pseudobarrel domain
CDDcd100173.84E-1652156No hitNo description
SMARTSM010194.6E-552160IPR003340B3 DNA binding domain
PfamPF023624.3E-1052159IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-1552147IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.27753160IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MESTQSDSSP QEGKEVLAAG LVLFSFKSGS SAPALEPVNA LIDSIGECQE PFTKTISESD  60
VNKQQSRLLI PKLDFKNFIQ PLLKDNVDLE MGVPVQTFNT AGKAYPMKFK KWSGSKGHVL  120
MDDWNKFVEE NQLKPCDSLT IQAFRAVQTG KLCFLISSKK VQALE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010034530.11e-116(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.11e-18B3 family protein