PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045668.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 305aa    MW: 34502.6 Da    PI: 4.7282
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045668.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18118161147
           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 
                   s ykGVr++k +g+W+AeIrdp+   k  r++lg+f+t++eAaka++
  EcC045668.20 118 SPYKGVRQRK-WGKWAAEIRDPRR--KGSRIWLGTFDTPQEAAKAYE 161
                   68*******9.**********833..34*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.92E-17118163IPR016177DNA-binding domain
SMARTSM003802.3E-19119178IPR001471AP2/ERF domain
PROSITE profilePS5103218.676119161IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-22120162IPR001471AP2/ERF domain
CDDcd000183.71E-21120160No hitNo description
PRINTSPR003672.6E-10120131IPR001471AP2/ERF domain
PfamPF008472.9E-12120161IPR001471AP2/ERF domain
PRINTSPR003672.6E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010411Biological Processxyloglucan metabolic process
GO:0045493Biological Processxylan catabolic process
GO:0046686Biological Processresponse to cadmium ion
GO:0009505Cellular Componentplant-type cell wall
GO:0009506Cellular Componentplasmodesma
GO:0009507Cellular Componentchloroplast
GO:0048046Cellular Componentapoplast
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0009044Molecular Functionxylan 1,4-beta-xylosidase activity
GO:0046556Molecular Functionalpha-L-arabinofuranosidase activity
GO:0050662Molecular Functioncoenzyme binding
GO:0080176Molecular Functionxyloglucan 1,6-alpha-xylosidase activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MPEPVIQPLD HNNLLKKPRK MTRITVDSRR VRKIRIFCRD PEATDDSSSE DESDHHRKGD  60
AKLFVREINL PLVSTHRASD LPSESSCQDS NNGFKSLEKK RKASPKGAAG TKRRACNSPY  120
KGVRQRKWGK WAAEIRDPRR KGSRIWLGTF DTPQEAAKAY EXXXXXXXLN RPSTSEDTES  180
VLSHTSPASV LDLDTTASNS TKEATADANE KNMERPCLEL IEEEPLISMD DVAIQDFYPG  240
EDIDSLFKDD FGGFVDDDIW GFGDIPLCGF DKNKPIELPD YDFELEDDEF GHWIDEPPSL  300
NIACP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-14120161344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066728.10.0PREDICTED: ethylene-responsive transcription factor ERF118
TrEMBLA0A059BFB50.0A0A059BFB5_EUCGR; Uncharacterized protein
STRINGXP_010066728.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.22e-21ERF family protein