PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC045730.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 311aa MW: 35633.1 Da PI: 7.222

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC045730.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.7	2.9e-33	68	208	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sg 81 lp+G++F+Ptd+e++ e+L++k+ g+ + +++i++++ i++++P++Lp v+++ + +fF++ +k+yatg+rk+r ++ + EcC045730.60 68 LPAGVKFDPTDQEIL-EHLEAKIMGNVrkihflI--DQFIPTLEgddgICSTHPERLP-GVSKDGQIRHFFHRPSKAYATGTRKRRRVHknadesET 160 799*********9.99***995554321..233444423345******.555666777**************63334555588 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vl+ ++ ++g kk+Lv+y +gr++k+ekt+Wvmh+y+l EcC045730.60 161 RWHKTGKTRSVLA-GRVVKGFKKILVLYnsHGRQRKPEKTNWVMHQYHL 208 9********.999*******7778*************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-36	60	227	IPR003441	NAC domain
PROSITE profile	PS51005	32.938	68	227	IPR003441	NAC domain
Pfam	PF02365	1.6E-15	69	208	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0003924	Molecular Function	GTPase activity
GO:0005525	Molecular Function	GTP binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MTWQTEDGRA IIPASYNPRD EDEDDDNTLL PTIACPSCGH SFPLFDQDLY NYEIIVVKRE 60 IVHDLVGLPA GVKFDPTDQE ILEHLEAKIM GNVRKIHFLI DQFIPTLEGD DGICSTHPER 120 LPGVSKDGQI RHFFHRPSKA YATGTRKRRR VHKNADESET RWHKTGKTRS VLAGRVVKGF 180 KKILVLYNSH GRQRKPEKTN WVMHQYHLGK SEEERDGELV VSKVFYRTQP RQPSSTNLKE 240 PKDTMPKSAQ SLNENDHVSK NSIDVIFYNS NPPCDVSYDQ LIIPKFAVHG EAAFLDPLTE 300 DSNKRKLVEY S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	149	RKRRR
2	146	150	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010052265.1	0.0	PREDICTED: NAC domain-containing protein 73
Swissprot	O49459	2e-95	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A059CCV5	0.0	A0A059CCV5_EUCGR; Uncharacterized protein
STRING	XP_010052265.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	9e-98	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]