PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC045909.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 398aa    MW: 43093 Da    PI: 6.3794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC045909.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-091442129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT+eEd++l+ +++++G g+W++ ++
     EcC045909.40 14 KGPWTPEEDQKLLAYIEEHGHGSWRALPS 42
                     79**********************99876 PP
2Myb_DNA-binding27.29.3e-0975992348
                     -HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                      W++Ia +++ +Rt++++k++w+++l
     EcC045909.40 75 LWSAIATHLP-KRTDNEIKNYWNTHL 99
                     7*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-12543IPR009057Homeodomain-like
PROSITE profilePS5129413.0899103IPR017930Myb domain
SuperFamilySSF466894.12E-151195IPR009057Homeodomain-like
SMARTSM007173.0E-1713101IPR001005SANT/Myb domain
PfamPF002494.0E-81442IPR001005SANT/Myb domain
CDDcd001674.46E-101699No hitNo description
PfamPF002491.9E-76399IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1272110IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005515Molecular Functionprotein binding
GO:0005524Molecular FunctionATP binding
GO:0009055Molecular Functionelectron carrier activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGRSPCCDKV GLKKGPWTPE EDQKLLAYIE EHGHGSWRAL PSKAVCRFCS LLLPLLLAPP  60
PPVHKHRSSE MREKLWSAIA THLPKRTDNE IKNYWNTHLK KRLAKMGIDP VTHKPKNDAL  120
VSSDGQSKSA AKLSHLAQWE SARLEAEARL ARESKLRSQS FQHHHSSSNS SQVYSAASAL  180
ASTSAAPPGL VKKATAPLPP SSPQSLDTLK AWTGSSWPST KSGEGSGGTG GSANGIAGDL  240
ESPTSTLTFS EPMNVLCENP KQMIEFVGSS GSSDSGMIKE EGEQEWKGLE SSITLPEFKE  300
GMGNNAVSFT STFPEMTMSL EGPWTPESLR ASSVHGNVEN NDMEEGFTSL LLNSSGDQSL  360
SDGGGESDKR SDYYEDNKNY WNSILNLVNS SPSESPMF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032514.10.0PREDICTED: transcription factor MYB30
TrEMBLA0A059AEV20.0A0A059AEV2_EUCGR; Uncharacterized protein
STRINGXP_010032514.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-58myb domain protein 16