PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046003.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 122aa MW: 13995.1 Da PI: 8.2395

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046003.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.4	1.7e-10	11	102	2	80
EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfv 80 +k+l++sd + ++rl +p+ ++++ k++e+ ++++ de+ + + + y+ +sg+yvl+++W keFv+ gL egD + EcC046003.20 11 KKTLKKSDLGHLSRLLIPRAGVATYvlpcmdeerarRVKSNEGAEVVVWDEDThSEHHLVFAYWASSGSYVLKGCWmKEFVQRRGLAEGDEI 102 6999**********************99988888444457889999998876566666677*********668*********66 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.1E-14	8	109	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.26E-14	10	118	No hit	No description
Gene3D	G3DSA:2.40.330.10	2.8E-14	11	107	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	1.5E-7	12	103	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
LVLRYDPYKI KKTLKKSDLG HLSRLLIPRA GVATYVLPCM DEERARRVKS NEGAEVVVWD 60 EDTHSEHHLV FAYWASSGSY VLKGCWMKEF VQRRGLAEGD EIGIHWDPIA SKFDLSLLHK 120 AN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010041685.1	3e-82	PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBL	A0A059C5C5	6e-81	A0A059C5C5_EUCGR; Uncharacterized protein
STRING	XP_010058649.1	2e-82	(Eucalyptus grandis)
STRING	XP_010058653.1	2e-82	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	8e-22	B3 family protein