PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046324.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 145aa    MW: 16314.1 Da    PI: 12.2197
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046324.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.51.4e-1783129349
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF   3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                   i +  +r vtfskRr g++KKA+ L+ L++a++a+i+fs+tgk y +
  EcC046324.10  83 IADLAKRRVTFSKRRGGLFKKANALCKLTGARAAIIVFSTTGKRYSF 129
                   778889*************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.03E-2073143IPR002100Transcription factor, MADS-box
SMARTSM004326.7E-1973132IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.08673133IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-147595IPR002100Transcription factor, MADS-box
PfamPF003197.3E-1982129IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-1495110IPR002100Transcription factor, MADS-box
PRINTSPR004046.5E-14110131IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
DCDCRRKPMA SSKSKPHQIL LLPSLLLLFW SYKNSPQNRS PPSLSPRKPR NAPARPLSPS  60
PSRKQLRTPP SMANRRRTGI AKIADLAKRR VTFSKRRGGL FKKANALCKL TGARAAIIVF  120
STTGKRYSFG NPKVEDIISD YLRRN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018718484.19e-23PREDICTED: agamous-like MADS-box protein AGL29
RefseqXP_018720723.12e-22PREDICTED: MADS-box transcription factor 47-like
TrEMBLA0A059D1D17e-21A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010045609.14e-37(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-19AGAMOUS-like 61