PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046329.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30975.3 Da    PI: 8.8733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046329.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.12.6e-241059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rienk+ rqvtf+kRr g+lKK +EL vLCda++ +iifss+gk+++y+s
  EcC046329.20 10 RIENKTTRQVTFAKRRVGLLKKTHELAVLCDAQIGLIIFSSSGKIFDYCS 59
                  8***********************************************96 PP
2K-box63.86.3e-2271167196
         K-box   1 yqkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                   y++++g++ +e++++e+lq+el+++++e+ nLq +  ++  +dL+++ l++  q+eqqLe s++k+R++K el+ +q+++l++kek+lq+en+++ +
  EcC046329.20  71 YNSHKGNQtVEHNEQEQLQNELRRIRRETCNLQLTVQQYTANDLNNMRLEDFDQMEQQLECSINKVRARKFELMQQQMDNLRRKEKMLQDENNQIYH 167
                   5667777779999********************************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.74161IPR002100Transcription factor, MADS-box
CDDcd002652.86E-41278No hitNo description
SuperFamilySSF554551.57E-29283IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.7E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004049.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014866.1E-2079167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.41585175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRGKIEIRR IENKTTRQVT FAKRRVGLLK KTHELAVLCD AQIGLIIFSS SGKIFDYCSQ  60
SSSMQEIIRK YNSHKGNQTV EHNEQEQLQN ELRRIRRETC NLQLTVQQYT ANDLNNMRLE  120
DFDQMEQQLE CSINKVRARK FELMQQQMDN LRRKEKMLQD ENNQIYHLVS QNGTSKILAP  180
LIKQQHMAMG HQQAGVSKPE EAQHVLEQFP FYGEEQPSSV LQLATLPTPF QPYRLQPTQP  240
NLQDFLQPSN YGGNHQNVLA MFMLIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-19174172MEF2 CHIMERA
6byy_B3e-19174172MEF2 CHIMERA
6byy_C3e-19174172MEF2 CHIMERA
6byy_D3e-19174172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058032.11e-172PREDICTED: MADS-box protein FBP24-like
SwissprotQ9ATE57e-75FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A218XMX81e-103A0A218XMX8_PUNGR; Uncharacterized protein
STRINGXP_010058032.11e-172(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.28e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]