PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046457.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ZF-HD
Protein Properties Length: 221aa    MW: 24036.9 Da    PI: 9.2216
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046457.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer42.12e-1384113332
   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpse 32 
                    v+YkeClkNhAa++Gg+a+DGCg+  +++
  EcC046457.20  84 VVKYKECLKNHAAAMGGTAMDGCGDIGAHS 113
                   689*********************977763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047708.7E-1085116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152314.6687145IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257740.00289120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466896.57E-19141208IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-31141209IPR009057Homeodomain-like
TIGRFAMsTIGR015652.3E-27147203IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MELPSQDTDI PIPINSSFGG GHGGHLIHQP QQHDPSSAIA SHNNHINLPR IPSNGPPPQP  60
PPPPPPLEEP QPQHQHVMPY KKVVVKYKEC LKNHAAAMGG TAMDGCGDIG AHSHSGPSES  120
DDQEDGGGSG GGGGAGAIRA PHHQAVKKRF RTKFTQEQKE KMFSFAEKVG WKIQKQEESV  180
VQQFCQEIGV KRRVLKVWMH NNKHNLAKKN PSNNNTPSSL N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A2e-241462051675ZF-HD homeobox family protein
1wh7_A2e-241482051875ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010065227.18e-63PREDICTED: zinc-finger homeodomain protein 4
TrEMBLA0A059B8L62e-61A0A059B8L6_EUCGR; Uncharacterized protein
STRINGXP_010065227.13e-62(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.14e-35homeobox protein 21