PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046660.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 439aa    MW: 48831.4 Da    PI: 7.8854
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046660.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eE e+l+++++ +G g+W+++++  g+ R++k+c++rw +yl
     EcC046660.30 14 KGLWSPEEYEKLLNYITNHGHGCWSAVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding47.63.9e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ +E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++
     EcC046660.30  67 RGAFSHQEENLIIELHAVLGNR-WSQIAARLP-GRTDNEIKNFWNS 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-25664IPR009057Homeodomain-like
PROSITE profilePS5129415.738961IPR017930Myb domain
SuperFamilySSF466891.87E-2712108IPR009057Homeodomain-like
SMARTSM007175.7E-101363IPR001005SANT/Myb domain
PfamPF002497.2E-141461IPR001005SANT/Myb domain
CDDcd001672.54E-91761No hitNo description
PROSITE profilePS5129425.42862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2565116IPR009057Homeodomain-like
SMARTSM007174.8E-1566114IPR001005SANT/Myb domain
PfamPF002493.1E-1467110IPR001005SANT/Myb domain
CDDcd001671.18E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EYEKLLNYIT NHGHGCWSAV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SHQEENLIIE LHAVLGNRWS QIAARLPGRT DNEIKNFWNS SLKKKLRQGG  120
IDPTTHKPLS EVADENDHKD KDKPIIPSIT QHNNNDHHHQ KSSSTAASCK KATLFEPALN  180
TDNLKVHHQQ HSLEVPASSE MRPYSEMFMK DFTFQQLSMN YGTSLGLPAS LHLSSNTLCF  240
DPRSSSENIM SQFSSDMSTP NIISPTMSSS SNAVPVTSAR VKPSISLPAE AAFMVNNGVP  300
SWEASPGNNN CSSGSTNGNG LVSNNSSINN TAFFESNNCF SWGLGEGTNA SKFEKHVPFH  360
HPIGSNTTEE NSGKWSEYLQ LPILFGSLTQ NNDEASHHHQ PVSHFHLMDG LNNIPSWQQK  420
HHQQANLDTF AAPVLGQTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26121165108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117LKKKLRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010070106.10.0PREDICTED: transcription factor MYB86
TrEMBLA0A059AY600.0A0A059AY60_EUCGR; Uncharacterized protein
STRINGXP_010070106.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.19e-91myb domain protein 61