PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046722.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 246aa    MW: 27466.9 Da    PI: 7.668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046722.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.52.1e-12133240297
                   EEE-..-HHHHTT-EE--HHH.HTT...........---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTH.HHHHHHHT--TT-EEEEEE- CS
            B3   2 fkvltpsdvlksgrlvlpkkfaeeh...........ggkkeesktltledesg.rsWevkliyrkksgryvltkGW.keFvkangLkegDfvvFkld 85 
                   +k lt+sd + ++rl + ++f+++h           + ++ ++ +++++d++   + ++ + ++ +sg+yvl++GW keFvk  gL +gD v ++  
  EcC046722.10 133 KKRLTQSDLGHLSRLLIGRDFVKSHflrwmneetvrQVESGKGADVIVRDLDTcSEHRLVFVFWASSGSYVLKGGWiKEFVKRRGLAAGDEVGIYW- 228
                   5889************************99888887555558899*****9887777788888*************999***********999995. PP

                   SS.SEE..EEEEE CS
            B3  86 gr.sefelvvkvf 97 
                    + s  e++++++
  EcC046722.10 229 -EpSASEFHFSLL 240
                   .445555577665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.94E-15131240IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0028132243IPR003340B3 DNA binding domain
CDDcd100171.46E-18132240No hitNo description
Gene3DG3DSA:2.40.330.103.0E-16133243IPR015300DNA-binding pseudobarrel domain
PfamPF023623.4E-9134238IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003714Molecular Functiontranscription corepressor activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
RVSHLQDHEQ KPVGDHLRSE VHSPPPSMDS SSCLSSLHDQ EKDRDEGTRG TSSAGVPVAP  60
DRNTKQVGDP SQEIVPAQLK RKSMASLTDA ETLIVEKKAK CQRTQKGKKE ASGCDAEEVS  120
TELTLLFDPY KIKKRLTQSD LGHLSRLLIG RDFVKSHFLR WMNEETVRQV ESGKGADVIV  180
RDLDTCSEHR LVFVFWASSG SYVLKGGWIK EFVKRRGLAA GDEVGIYWEP SASEFHFSLL  240
HKANQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010042934.11e-155PREDICTED: putative B3 domain-containing protein At1g78640
TrEMBLA0A059C5001e-146A0A059C500_EUCGR; Uncharacterized protein
STRINGXP_010058722.11e-171(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33720.12e-28B3 family protein