PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046766.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Dof

Protein Properties

Length: 356aa MW: 38341.6 Da PI: 8.7031

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046766.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.3	8.2e-39	33	91	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + lkcprC+s+ntkfCyynnyslsqPr+fCk+C+ryWt+GG+lrnvPvGgg+rknk+++ EcC046766.30 33 QPLKCPRCESSNTKFCYYNNYSLSQPRHFCKSCKRYWTRGGTLRNVPVGGGCRKNKRVK 91 679*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.6E-33	34	89	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	35	89	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	36	89	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	37	73	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009908	Biological Process	flower development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MIDEKRLNNS MASTGSPLME KNTPPQQQQQ QLQPLKCPRC ESSNTKFCYY NNYSLSQPRH 60 FCKSCKRYWT RGGTLRNVPV GGGCRKNKRV KRPASASATD TAPSSSASAT SDHHPPPHKT 120 HMENLSSSGS NHNSNPMNLG PLFYGNPADQ MSNNLAFPRL TSSSSLYDLH PQLSALGLGF 180 SSSAIIPANS CADTSSLQEG FNANNASGLN VQDLAQITNP LLLPSYSSMF GTSSSPSSSS 240 SCSTTTTIAS LLASSFHHQQ QKFINASGLR ESRALVHNNF KPMSPVEELQ GLRSNSEVRI 300 EGGQSRNIGW NGSIPCQNPV DQIGLSADPG SICWSSLNVG NSWHDPTSIG LHQSLL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MIDEKRLNNS MASTGSPLME KNTPPQQQQQ QLQPLKCPRC ESSNTKFCYY NNYSLSQPRH  60
FCKSCKRYWT RGGTLRNVPV GGGCRKNKRV KRPASASATD TAPSSSASAT SDHHPPPHKT  120
HMENLSSSGS NHNSNPMNLG PLFYGNPADQ MSNNLAFPRL TSSSSLYDLH PQLSALGLGF  180
SSSAIIPANS CADTSSLQEG FNANNASGLN VQDLAQITNP LLLPSYSSMF GTSSSPSSSS  240
SCSTTTTIAS LLASSFHHQQ QKFINASGLR ESRALVHNNF KPMSPVEELQ GLRSNSEVRI  300
EGGQSRNIGW NGSIPCQNPV DQIGLSADPG SICWSSLNVG NSWHDPTSIG LHQSLL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010057393.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	A0A059C9E6	0.0	A0A059C9E6_EUCGR; Uncharacterized protein
STRING	XP_010057393.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4709	26	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	1e-33	Dof family protein