PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046819.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

WOX

Protein Properties

Length: 370aa MW: 41479.1 Da PI: 7.982

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046819.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.9	1.3e-21	82	141	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+p+a+++++++++l +++ ++V++WFqN++a+e++ EcC046819.10 82 SRWNPTPEQLRTLEELYRRgTRTPNADQIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 141 7***************99************************************97 PP
2	Wus_type_Homeobox	116.6	1.2e-37	81	143	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+PtpeQ++ Leely++G+rtPn+++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ EcC046819.10 81 SSRWNPTPEQLRTLEELYRRGTRTPNADQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 143 79***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	1.3E-4	79	146	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-19	82	141	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.72E-12	82	147	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-8	82	141	IPR009057	Homeodomain-like
CDD	cd00086	3.99E-6	83	143	No hit	No description
PROSITE profile	PS50071	11.062	87	142	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 370 aa Download sequence Send to blast
MYMMGCHDDG DLYMAESFNG RKLRPLMPRP VTNPSPNNGG TNVASPCLSR IHGADILALN 60 HHLATMAEQK REFNSPQVVV SSRWNPTPEQ LRTLEELYRR GTRTPNADQI QQITAQLRRY 120 GKIEGKNVFY WFQNHKARER QKRRRQMEAG PEEPNRDAEE SERKETGASR TGLEVEETKN 180 NWAPPINCST LAEEPAGATT QKAPKAGSAA TLAERRTRSS SSDQWIKFDD GEFQWTRRHS 240 ASNFLERNAT WQMVQLPSCP HPTHLINTTA PSTVAPPAAP SLLSAAARAS SMDPNKFLKA 300 HELRSFFMSS PFRDDHDLAS GGGGGGRECE EDSQTLQLFP LRSGDDFDGK SASPPSHHQH 360 QFFEFLPLKN

Sequence ? help Back to Top

Protein Sequence Length: 370 aa Download sequence Send to blast

MYMMGCHDDG DLYMAESFNG RKLRPLMPRP VTNPSPNNGG TNVASPCLSR IHGADILALN  60
HHLATMAEQK REFNSPQVVV SSRWNPTPEQ LRTLEELYRR GTRTPNADQI QQITAQLRRY  120
GKIEGKNVFY WFQNHKARER QKRRRQMEAG PEEPNRDAEE SERKETGASR TGLEVEETKN  180
NWAPPINCST LAEEPAGATT QKAPKAGSAA TLAERRTRSS SSDQWIKFDD GEFQWTRRHS  240
ASNFLERNAT WQMVQLPSCP HPTHLINTTA PSTVAPPAAP SLLSAAARAS SMDPNKFLKA  300
HELRSFFMSS PFRDDHDLAS GGGGGGRECE EDSQTLQLFP LRSGDDFDGK SASPPSHHQH  360
QFFEFLPLKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010033710.1	0.0	PREDICTED: WUSCHEL-related homeobox 1
TrEMBL	A0A059D0E1	0.0	A0A059D0E1_EUCGR; Uncharacterized protein
STRING	XP_010033710.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	5e-58	WUSCHEL related homeobox 1