PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046825.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 100aa MW: 11467.8 Da PI: 5.1324

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046825.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.8	2.1e-21	5	51	5	51
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ++s ++tf+kRrn ++KKA+ LS LCdaev +iifs tg+lyeyss EcC046825.20 5 SSSSDHITFAKRRNSLMKKAKDLSQLCDAEVGIIIFSCTGQLYEYSS 51 678899***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.554	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.2E-12	4	52	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.8E-18	6	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.09E-22	7	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-14	15	30	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.0E-14	30	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 100 aa Download sequence Send to blast
MNPHSSSSDH ITFAKRRNSL MKKAKDLSQL CDAEVGIIIF SCTGQLYEYS SSSMDSVIER 60 YTNLKREAQP ELDQPTFDAR VLEEEIANLN RQLQGLQEYH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time in long-day photoperiod. Participates in the repression of FT expression and floral transition, by interacting closely with the FLC-SVP pathways (PubMed:24876250). Functions in the satellite meristemoid lineage of stomatal development (PubMed:17704216). {ECO:0000269\|PubMed:17704216, ECO:0000269\|PubMed:24876250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the micro RNA miR824. {ECO:0000269\|PubMed:18579782}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029963.1	1e-66	PREDICTED: MADS-box transcription factor 23 isoform X2
Refseq	XP_018717722.1	1e-67	PREDICTED: MADS-box transcription factor 27 isoform X3
Swissprot	A2RVQ5	6e-30	AGL16_ARATH; Agamous-like MADS-box protein AGL16
TrEMBL	A0A059ATD0	5e-50	A0A059ATD0_EUCGR; Uncharacterized protein
STRING	XP_010029960.1	7e-66	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	3e-32	AGAMOUS-like 16

Publications ? help Back to Top
Yang K,Jiang M,Le J A new loss-of-function allele 28y reveals a role of ARGONAUTE1 in limiting asymmetric division of stomatal lineage ground cell. J Integr Plant Biol, 2014. 56(6): p. 539-49 [PMID:24386951]