PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046871.50

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

FAR1

Protein Properties

Length: 708aa MW: 80097 Da PI: 7.7923

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046871.50	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	72.6	8.7e-23	62	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitk.rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAk++GF+vr+ k ++s n+ i+k + f Cs++g++++e+ + + +r +r trtgC+ak+k + + dg+w+++k++l HnH+l EcC046871.50 62 DFYNNYAKQTGFNVRRGKAEYSGSNKAIIKaKYFLCSCQGRKSKEQID-KPTRYKRRDTRTGCDAKIKCTVH-DGTWKISKVVLAHNHDLK 150 6*******************7776666516689******999.99***************99.*************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-19	62	149	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.4E-18	254	346	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.458	533	569	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-4	540	567	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.5E-4	544	571	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
ECSFVNLKSS QEASYATLPE VIGDEDDTQS TSGANIDGEE LESHSGVPRL GMVFFSEEAV 60 YDFYNNYAKQ TGFNVRRGKA EYSGSNKAII KAKYFLCSCQ GRKSKEQIDK PTRYKRRDTR 120 TGCDAKIKCT VHDGTWKISK VVLAHNHDLK GCFSSAQGRV EDSWATSALS TRKIADEVRM 180 AREPDHSDVS QGARKNRPLA ELEATQDLID HFKNMQIQDP SFFYTAQVEV AHGMANFFWR 240 DSRSKVDYEH FGDVLVLDTR TRINKYDMIC AAFWGLNHHR QRIIFGCAFL VDQTVCSFNW 300 LLQTFLTAMS WQKPQTIITE VSKEIADALR VVMPDTSHCL PYWSILNSFD QYLSPLSDRP 360 GISNLFSECV FHVHSQEEFE LKWNCFVGKY KLHENAWLAS LYGMRKKWSN AFMKDVFSAG 420 LLSIQNDEDA CAIFGSLSCE AMKLSQIARQ CGKLADHIRR EEFLADKHCE KNMTNLISRN 480 AMEKEAECLY TRPIFRMFQE EFINALSLAI DRSGGTTPLP EFKLTEEGST KINTVKFDPS 540 NSTLACSCGK FESVGILCFH ALKVLNFKNI FKIPSHYLLK RWTKSAKDSL PVDTCSAGIA 600 RDNGPANSFI GEFMRKALHV VHICATKKRE RIALKSIGLA LEHIAKAPRT EEIVVADDSD 660 SKEDMGQTTC NDALETQLDQ GNVAKSGMGF PRVRRKVEGD RPARKQRT

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

ECSFVNLKSS QEASYATLPE VIGDEDDTQS TSGANIDGEE LESHSGVPRL GMVFFSEEAV  60
YDFYNNYAKQ TGFNVRRGKA EYSGSNKAII KAKYFLCSCQ GRKSKEQIDK PTRYKRRDTR  120
TGCDAKIKCT VHDGTWKISK VVLAHNHDLK GCFSSAQGRV EDSWATSALS TRKIADEVRM  180
AREPDHSDVS QGARKNRPLA ELEATQDLID HFKNMQIQDP SFFYTAQVEV AHGMANFFWR  240
DSRSKVDYEH FGDVLVLDTR TRINKYDMIC AAFWGLNHHR QRIIFGCAFL VDQTVCSFNW  300
LLQTFLTAMS WQKPQTIITE VSKEIADALR VVMPDTSHCL PYWSILNSFD QYLSPLSDRP  360
GISNLFSECV FHVHSQEEFE LKWNCFVGKY KLHENAWLAS LYGMRKKWSN AFMKDVFSAG  420
LLSIQNDEDA CAIFGSLSCE AMKLSQIARQ CGKLADHIRR EEFLADKHCE KNMTNLISRN  480
AMEKEAECLY TRPIFRMFQE EFINALSLAI DRSGGTTPLP EFKLTEEGST KINTVKFDPS  540
NSTLACSCGK FESVGILCFH ALKVLNFKNI FKIPSHYLLK RWTKSAKDSL PVDTCSAGIA  600
RDNGPANSFI GEFMRKALHV VHICATKKRE RIALKSIGLA LEHIAKAPRT EEIVVADDSD  660
SKEDMGQTTC NDALETQLDQ GNVAKSGMGF PRVRRKVEGD RPARKQRT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018718953.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A059D3A4	0.0	A0A059D3A4_EUCGR; Uncharacterized protein
STRING	XP_010046144.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-85	FAR1-related sequence 5