PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046909.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 230aa    MW: 26557.1 Da    PI: 6.6261
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046909.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM146.91e-45121431128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lppGfrFh tdeel+  yLk+k+ g+   +  ++i+e+d++++ePw+Lp+   ++ + ke++f+++ ++ky +++r+ r+t++gyWk tgk+++++s
  EcC046909.20  12 LPPGFRFHATDEELLLLYLKPKILGQLdEPYYNIIPEIDVCEWEPWQLPAmfDCTLKGKELFFYCRVKHKYLNSRRSDRTTRTGYWKVTGKERAIMS 108
                   79********************999985566788***************5345555889************************************** PP

           NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++e++g+kktLvfy+gr p+g++tdWvmhey+l
  EcC046909.20 109 EdTNEQIGIKKTLVFYEGRVPRGKRTDWVMHEYHL 143
                   977889****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-498168IPR003441NAC domain
PROSITE profilePS5100549.9712168IPR003441NAC domain
PfamPF023651.2E-2313143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEDTTSEAMS LLPPGFRFHA TDEELLLLYL KPKILGQLDE PYYNIIPEID VCEWEPWQLP  60
AMFDCTLKGK ELFFYCRVKH KYLNSRRSDR TTRTGYWKVT GKERAIMSED TNEQIGIKKT  120
LVFYEGRVPR GKRTDWVMHE YHLNSKHLGS NHNEGEMLPY VACRIKNKKD KKATMCHAPT  180
ISPEGYSRSL LTSTSNENPS VNQEGDLLTF RNTINIEIAD NQGAADTQSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-3361719171Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010029941.11e-164PREDICTED: protein NTM1-like 9
TrEMBLA0A059DCT81e-103A0A059DCT8_EUCGR; Uncharacterized protein
STRINGXP_010029941.11e-164(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-43NAC transcription factor-like 9