PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC046950.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 220aa    MW: 25145.9 Da    PI: 10.4766
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC046950.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.26.2e-1382187198
                   EEEE-..-HHHHT.T-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
            B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                   f+k+ + sd   + +rl l k+ ++e+       + ++e+++++t +++ g+++ ++++++ ++  yvl ++WkeFv +n+Lke D++ +   ++ +
  EcC046950.40  82 FEKQVKASDLKDQqNRLLLRKEDVREFilplleeDDNPEQGVEVTTYNTLGETFPMQFKMWSGK-VYVLMRNWKEFVGENKLKESDILKIWAFRDvQ 177
                   889999999877679*******************99999*******************777765.6999******************9988777767 PP

                   EE..EEEEE- CS
            B3  89 efelvvkvfr 98 
                   +++l++ + r
  EcC046950.40 178 TKRLCFVISR 187
                   7777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-1782188IPR015300DNA-binding pseudobarrel domain
CDDcd100172.79E-1182187No hitNo description
PfamPF023621.4E-982187IPR003340B3 DNA binding domain
SMARTSM010190.001982189IPR003340B3 DNA binding domain
SuperFamilySSF1019361.22E-1582190IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.61483189IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MFSGDSTVRE EANEVLQASL FLCVLKHTGE GVSRGDKPAR SKDVQVSSSS CGPLRKPRRS  60
NPPIVRRVNA LIDSIGRCRG PFEKQVKASD LKDQQNRLLL RKEDVREFIL PLLEEDDNPE  120
QGVEVTTYNT LGETFPMQFK MWSGKVYVLM RNWKEFVGEN KLKESDILKI WAFRDVQTKR  180
LCFVISRTPK APGQIRTEKG PRSERRKRVE SKPQKALLSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041424.11e-139PREDICTED: putative B3 domain-containing protein At4g03170
TrEMBLA0A058ZRC71e-138A0A058ZRC7_EUCGR; Uncharacterized protein
STRINGXP_010034523.11e-140(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21031835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.18e-24B3 family protein