PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC046982.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Protein Properties

Length: 109aa MW: 12761.7 Da PI: 8.6451

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC046982.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.1	5.6e-12	25	99	21	98
HH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 21 kfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +fa++h +++k +++t + s rs vkl+ + ++++++GW F+++ +L++g +++F+l++r++ ++v++f+ EcC046982.20 25 QFARQHiQENK-KERTFR---YSDRSRPVKLSRYTREIQVFFSAGWPAFARETHLCVGNVCMFELIDRDDIVFKVSIFS 99 68888853332.333455...466999999944455555***************************9999989999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-12	25	100	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.75E-10	25	100	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	8.4E-9	25	100	IPR003340	B3 DNA binding domain
CDD	cd10017	1.11E-8	25	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 109 aa Download sequence Send to blast
MFHFVCYAIS IIVELYSRMG GGQCQFARQH IQENKKERTF RYSDRSRPVK LSRYTREIQV 60 FFSAGWPAFA RETHLCVGNV CMFELIDRDD IVFKVSIFSS GGKDQIHID

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010065666.1	1e-43	PREDICTED: B3 domain-containing transcription factor VRN1 isoform X6
TrEMBL	A0A059BAW7	4e-41	A0A059BAW7_EUCGR; Uncharacterized protein
STRING	XP_010065661.1	1e-37	(Eucalyptus grandis)