PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047084.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 249aa    MW: 28098.4 Da    PI: 5.0414
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047084.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM133.51.5e-4151362128
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                   p GfrF Pt+eel+++yL+++++g+   +l ++i+ +diy +ePw+Lp+     +++++++w+fF++ ++++a+g r++r+t+ gyWkatg+   v+
  EcC047084.10   5 PTGFRFYPTEEELISFYLHNQLQGSLqDQLRRIIPVLDIYATEPWNLPElsgeLCRKDKEQWFFFAPMQEREARGGRPSRSTAVGYWKATGSPGYVH 101
                   89*********************99834555669999**********9656754455777************************************* PP

           NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   s++++++g+kk +vfy g+ap+g+kt+W ++eyr+
  EcC047084.10 102 SSDNKAIGMKKAMVFYVGKAPTGRKTKWKLNEYRA 136
                   *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-433168IPR003441NAC domain
PROSITE profilePS5100544.9834169IPR003441NAC domain
PfamPF023653.3E-215135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MEDHPTGFRF YPTEEELISF YLHNQLQGSL QDQLRRIIPV LDIYATEPWN LPELSGELCR  60
KDKEQWFFFA PMQEREARGG RPSRSTAVGY WKATGSPGYV HSSDNKAIGM KKAMVFYVGK  120
APTGRKTKWK LNEYRAIEMI SPPNSNTPSS SMPVFKLRQE FALCRVYVVS GSSRAFDRRP  180
LELVVAETIQ GGDDGSGDGG GGNGRLVSSS RSVVENDAGG SSYTETTSME TEEPIWDWEP  240
IWDSEPFWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-33517418170NO APICAL MERISTEM PROTEIN
1ut4_B7e-33517418170NO APICAL MERISTEM PROTEIN
1ut7_A7e-33517418170NO APICAL MERISTEM PROTEIN
1ut7_B7e-33517418170NO APICAL MERISTEM PROTEIN
4dul_A7e-33517418170NAC domain-containing protein 19
4dul_B7e-33517418170NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034223.11e-162PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR34e-84NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A059AAV81e-155A0A059AAV8_EUCGR; Uncharacterized protein
STRINGXP_010034223.11e-161(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.18e-82NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]