PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC047161.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 340aa MW: 36069.2 Da PI: 5.4056

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC047161.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.1	1.4e-20	141	190	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g EcC047161.20 141 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDRAAYKLRG 190 59****9.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	3.95E-33	140	200	No hit	No description
SuperFamily	SSF54171	1.57E-23	141	199	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.117	141	198	IPR001471	AP2/ERF domain
SMART	SM00380	5.6E-37	141	204	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-32	141	199	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	142	153	IPR001471	AP2/ERF domain
Pfam	PF00847	2.3E-14	142	190	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.2E-11	164	180	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MATTMEFYSS RSALPSYRIS NGGDELMEAL CPFIGGYGAS TSTPSFSSPS SSSSSLFSFE 60 PVSFSDGCST SPDPLGLELP GPIGLNHLTP SQINQIQAQI QFQSTNLPSY HGHGYHPSML 120 LGPKPVSMKI SGSAGKPATK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT FDTAEEAALA 180 YDRAAYKLRG DFARLNFPHL KHCAASDVGD GRVSPLHSSV DAKLEAICQT IAEKKADGAK 240 KPPASGRSRA AAAAAAAAAA AAAAAAAREV SSPEEASEVT EVTEVTEVKG YEPESEGSAG 300 SSPLSDLTFD DFAEATWECV SLPEASTLMK YPSEIDWDAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-20	140	198	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061815.1	0.0	PREDICTED: ethylene-responsive transcription factor RAP2-4
Swissprot	Q8H1E4	2e-75	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A059BT63	0.0	A0A059BT63_EUCGR; Uncharacterized protein
TrEMBL	G9B8Q2	0.0	G9B8Q2_EUCGL; DREB2
STRING	XP_010061815.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22190.1	8e-43	ERF family protein

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]