PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC047205.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 108aa    MW: 12788.7 Da    PI: 10.6789
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC047205.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.9e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll  +v+++G g W++++++ g++R++k+c++rw++yl
     EcC047205.30 11 KGSWTEEEDVLLRSCVQRYGEGEWHRVPQRAGLNRCRKSCRLRWLNYL 58
                     799********************************************7 PP
2Myb_DNA-binding44.43.7e-1464108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++  +E + ++++ k+lG++ W++Ia +++ gRt++++k++w+++
     EcC047205.30  64 RGKFQDDEVDMIIRLQKLLGNR-WSLIAGRLP-GRTANDVKNYWNTH 108
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.562662IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-22860IPR009057Homeodomain-like
SuperFamilySSF466891.95E-288105IPR009057Homeodomain-like
SMARTSM007171.2E-141060IPR001005SANT/Myb domain
PfamPF002491.7E-171158IPR001005SANT/Myb domain
CDDcd001674.79E-101358No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2161108IPR009057Homeodomain-like
PROSITE profilePS5129417.75763108IPR017930Myb domain
SMARTSM007171.9E-763108IPR001005SANT/Myb domain
PfamPF002491.4E-1264108IPR001005SANT/Myb domain
CDDcd001671.92E-869108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005509Molecular Functioncalcium ion binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MEKGSSFGLR KGSWTEEEDV LLRSCVQRYG EGEWHRVPQR AGLNRCRKSC RLRWLNYLKP  60
NIKRGKFQDD EVDMIIRLQK LLGNRWSLIA GRLPGRTAND VKNYWNTH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2291075102B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034461.13e-74PREDICTED: transcription factor MYB114
SwissprotQ9FNV96e-59MY113_ARATH; Transcription factor MYB113
TrEMBLA0A059AE528e-73A0A059AE52_EUCGR; Uncharacterized protein
STRINGXP_010034461.11e-73(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-61myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]